Gblocks

Gblocks quickguide - Start with the query aligment: NAME.aln - Convert NAME.aln to .piral format: NAME.piral - Call Gblocks: [ramonm@dnaramon FOLDER that includes NAME.piral]gb - Once Gblock is runing: type b (Block parameters) - Inside Block parameters: type 4 (Lengh of the block) - Iside Lengh of the block: type 5 - Inside Block parameters: type 5 (Allowed gap positions) - Iside Allowed gap position: choose with half - In the main menu: type g (execute) - A new file gonna be generated: NAME.piral_gb - Change the name og the file to: NAMEgb.piral, by this way we can open the file with seaview.